Jerome Lecoq

The documentation for reading from NWB files could be strengthened with real-like application of creating scientific figures from NWB files. Current documentation shows how to access individual items but shows...

The pyNWB documentation is really well structured, convenient and easily usable. The API documentation is also thorough at each individual function. Still, it is a little challenging to convert data...

[Bug]: Suite2p NWB files

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### What happened? Not sure if it belongs here but suite2p seems to generate non-compliant NWB files. Here is a copy of my validation errors. Some are due to me...

GPU memory error doing inference on GPU with some version combination

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Doing long inference with Tensorflow 2.7, Python 3.9 can cause gpu out of memory errors like so: > 2021-12-01 13:52:12.086386: I tensorflow/core/common_runtime/bfc_allocator.cc:1074] 1 Chunks of size 28311552 totalling 27.00MiB >...

h5py is causing some conda installation problem on some system

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Moving the latests code to a separate linux box, I experienced issues installing tensorflow 2.4.4 with python 3.7.x due to the h5py locked version. Further testing is required to remove...

This is confusing but will break external dependencies. Will need to add proper notice for the next release.

Update gallery.yml

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Adding the OpenScope databook link

Return metric value and threshold for validation functions that have them.

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The purpose of this is to : - Be able to debug when validation is failed - Have a record of data-trends in the QC system that goes beyond pass...