Jerome Lecoq

Can you clarify a little more? Suite2p does output NWB files. What should be given to NeuroConv? The NWB from suite2p or the binary files from suite2p?

From a user perspective, I think it is reasonable to ask that the ecosystem of tools work well together. If suite2p generates an NWB file it should be possible to...

The following code fixes MOST of the critical errors. ``` import numpy as np from pynwb import NWBHDF5IO from pynwb.ophys import RoiResponseSeries import h5py from pynwb.file import Subject # Open...

Thanks for this suggestion, this does not fix this error.

I am suspecting this is related to the same rois table being referenced across Neuropil, Fluorescence and Deconvolved ``` Fields: comments: no comments conversion: 1.0 data: description: no description dimension:...

I am not sure how to reconstruct it while keeping this

I might just abandon this approach. This is too buggy Perhaps I will just use this from @rly https://github.com/rly/aibs-nwb1-to-nwb2/blob/main/append_suite2p.py

This code generates the same error upon validation: ``` 0.0 Rorb-IRES2-Cre_590168381_590565013_merged.nwb: During io.read() - : Key '2e2456e5-c167-412b-a2be-ca9f9ca74fe8' is already in this dict. Cannot reset items in a LabelledDict. - 'None'...

I think after I spent 1 days on this, I am concluding that suite2p NWB files are useless with regards to Dandi. Both Ryan and I tried to make valid...

So luckily, I had kept these folders from Suite2p in my processing pipeline of those 40 experiments so I could try this out. I eventually tried to create those NWB...