Jerome Kelleher

Reopening this as it's ongoing work

Thanks for doing this @jni - I think would personally very much appreciate this feature.

This is really about low-level C API stuff here for now - how we might (or not) surface this to higher level things like representing multiple chromosomes is something we...

@petrelharp @bhaller - I realised there was an easy way to join the tables by appending all the edges to the first table, sorting and then squashing adjacent edges. This...

@petrelharp @bhaller - I realised there was an easy way to join the tables by appending all the edges to the first table, sorting and then squashing adjacent edges. This...

Ah, probably need to set the sample flags for the final generation.

One more update - I've marked the sample flags and updated the original WF example so that it also indexes the output, and I think the outputs are now identical...

I think we can meaningfully compare the timings of this with haploid_wright_fisher now @petrelharp and @bhaller

Aha! That's great @petrelharp, it really clarifies things :+1:

OK, I'll fix it up when I get a chance.