Jerome Kelleher
Jerome Kelleher
See the docs here for details on building python extension module: https://tskit.dev/tskit/docs/stable/development.html#id1
Here's a quick sketch of another approach to doing this @Silloky: ```python import msprime demography = msprime.Demography() demography.add_population(name="A", initial_size=1_000) demography.add_population(name="B", initial_size=1_000) demography.add_population(name="C", initial_size=10_000) demography.add_population_split(time=10000, derived=["A", "B"], ancestral="C") ts = msprime.sim_ancestry(samples={"A":...
Closing this due to inactivity - please feel free to reopen if you'd like to pick it back up @Silloky
Requires bgen2vcf in ``bio2zarr`` so I don't know how soon this will happen. I wouldn't tie it to next point release.
Sounds good, let's go ahead and clear it out then.
See discussion from @petrelharp here: https://github.com/tskit-dev/tskit/pull/2823#discussion_r1413346530
I think the answer is probably something to do with computing totals or average in divmat, but I'm not really clear either way.
This [gist](https://gist.github.com/jeromekelleher/33927b941f2d63317049aacce16ff63a) is the basis of the divmat implementation I developed
I don't really have an opinion on how the stat should be defined, but I think it's fine to change change older definitions if we like - they haven't been...
Note this will have to take into account the issue discussed in #2792, where we need to think about the consequences of edges not being inserted into the tree in...