Jerome Kelleher

Excellent question @daikitag! This is a limitation in the input validation in for mutations, which we are increasingly coming to agree is a bug. The second issue example is the...

Hmm, this is a bit of a mess - I think we'll just have to write some code to do the actual requirements checking, and then see how much code...

Yes... but I guess throwing an error saying "you should run tables.compute_mutation_parents()`` would mitigate this?

Yes, good idea

This sounds really interesting and potentially very powerful @rabernat! Would you mind commenting on the implications of a pyarrow dependency?

After discussion on #121, I think the best approach here is to add ``start`` and ``stop`` arguments in sequence coordinates (as above). The trees in the returned sequence would guarantee...

Thinking about how to implement this, I think the right way to do it is to add a ``tsk_tree_set_interval(left, right)`` method which can shrink the interval for a tree. This...

Adding this to the 1.0 milestone for now as something to review and plan ahead for.

Also we can implement this quiet efficiently since #2661 was merged

If you could tack on a commit pinning to an older version of meson in your current PR as a workaround that would be great, thanks. See linked issue for...