Gregory Jefferis

Results 121 comments of Gregory Jefferis

Super! @appelmar FYI.

Thanks so much for this @gaborcsardi! I am not very experienced with Docker. I tried to get it to run like so ``` (base) Gregs-MBP-2:gcc11-docker jefferis$ docker run rhub/debian-gcc11-devel R...

Thanks so much again @gaborcsardi. I was able to solve my problem making use of this image. Here are the steps in case this of use to others. First make...

Just some additional info here @william-silversmith. This is being used via the [fafbseg](https://github.com/natverse/fafbseg) R package via its reticulate python interface. The observed behaviour is that when accessing flywire resources directly...

Also @markl02 can you check the path? I think your error report on slack said ``` C:/Users/marks/Documents/.cloudvolume/secrets/cave-secret.json ```

Thanks, Will! That mixed path does look unhappy. @markl02 can you check this on your machine what the R+python combo reports by doing this? ``` secrets=reticulate::import('cloudvolume.secrets') secrets$secretpath('secrets/cave-secret.json') ```

Ah, thanks a lot, Will. But there may be an additional problem here besides that forward/reverse slash. If we ask R and python/cloudvolume to expand `~/.cloudvolume/secrets/cave-secret.json` on Mark's machine: ```...

@markl02 can you report what happens if you do ``` # Python via reticulate os=reticulate::import('os') os$path$expanduser("~/.cloudvolume/secrets/cave-secret.json") # native R path.expand("~/.cloudvolume/secrets/cave-secret.json") ```

Thanks. So Mark if you set `CLOUD_VOLUME_DIR` environment variable on the R side to ``` Sys.setenv(CLOUD_VOLUME_DIR=path.expand("~/.cloudvolume")) ``` then maybe you could force them to agree? Will, when does cloudvolume check...