Jean Keller

I've also tried to set up different PYTHON3_PATH (to not take the conda) and to reinstall singularity and build a BRAKER in a fresh environment without conda installed. Didn't solved...

Got the same error only on WSL2. I tried with fresh installation of WSL2 running Ubuntu-22.04/Ubuntu-20.04 and still got the error.

Hi @scintilla9, Unfortunately no. I tried to modify some parameters (such as minimal contig length) and different BRAKER3 version, nothing improved the situation. We contacted the GeneMark developper 3 months...

Hi @scintilla9 Thanks for the update. I also thought about this but turns out that some genome with more than 10K contigs were successfully annotated with protein+RNAseq while some with...

Hi @scintilla9, GeneMark team found the issue and fixed it (see #648). GeneMark has to be updated to version 1.02, I don't know when the fix will be uploaded to...

Hello, We had similar error and normally the GeneMark team fixed it (see #648), GeneMark has to be updated to v1.02 or you should wait to the update of the...

Hey, I've a similar issue (see #592), do you have something in errors/fix_in_frame_stop_codon_genes_augustus.hints.err? Did you try to run the test1 script? Thanks

In my case, this problem happens each time on a local machine (64 cores/256Gb RAM, WSL2). But the container works on one of the HPC. So I guess there is...

Hi, I've also had the same issue when running EarlGrey on SLURM HPC, and what surprised me is that for the exactly same input file, one run consummed more than...

Hi @TobyBaril Thanks for your answer. As it was few months ago, the log file of the failed run has been removed. I can still share the one for the...