Jean Keller

icon indicating a website link https://sites.google.com/view/evolutionmpmi/home

icon company CNRS icon location Castanet-Tolosan; France icon location Postdoc working on eukaryotes evolution. #bioinformatics #python

Results 16 comments of Jean Keller

Out of Memory but the job seemed already finished

Hi Toby, Yes, it is weird. The HPC team installed EarlGrey as a SLURM module instead of an user-conda environment and on the tests I have run, it looks like...

Out of Memory but the job seemed already finished

Hi all, So I've run a test with a large genome (4Gb) and after 12 days of run, it ended with OOM error. This was the EarlGrey v5.0.0 installed and...

Out of Memory but the job seemed already finished

Hi @TobyBaril, Thanks for the answer! Good to hear that you have a clue about what could cause the issue. How do you want me to transfer the log file...

Out of Memory but the job seemed already finished

Hi Toby, That's awesome! Thanks for this fast update. Are the coming patches major patches? or should we already use this 5.1.0 version?

Out of Memory but the job seemed already finished

excellent, thank you! I'll try it asap :)

Out of Memory but the job seemed already finished

Hi, Happy new year 2025! I've tested the v5.1.0 of EarlGrey on a 4Gb genome and the OOM error is still present: "slurmstepd: error: Detected 15 oom_kill events in StepId=14158717.batch....