Feature: Add Ability to accept multiple result files

[jcharkow]

Description

1. Loaders (MzMLLoader and SqMassLoader can accept a list of rsltsFile this is useful for automatically plotting features from a different software on the same plot.
2. Auto detect results file based on contents (does not have to be supplied by user)
3. Can specify a runName in loadTransitionGroup() and loadTransitionGroupFeatures() to only fetch information from that run. This is useful for plotChromatogram() method can only plot a chromatogram from a single run
4. Update tests + docs to reflect these changes.

Please delete options that are not relevant.

• [ ] Bug fix (non-breaking change which fixes an issue)
• [x] New feature (non-breaking change which adds functionality)
• [x] Breaking change (fix or feature that would cause existing functionality to not work as expected)
• [x] This change requires a documentation update

How Has This Been Tested?

This is still a work in progress

Contents (#137)

Other

• extend ResultsLoader class
• Add tests for new ResultsLoader methods
• minor fixes
• update tests snapshots
• fix tests
• add scoring distribution
• add documentation to OSWAccess getScoreTable
• add tests for new Score distribution functions
• add back searchResultAnalysis plots
• SearchResultsAnalysis server
• get GUI for search plot distributions working
• remove include_groups flag
• bug in transitionLoading
• Roestlab/massdash into refactor/resultsPlotting
• docs: Update Loading Feature Information Docs
• update docs to reflect new behaviour
• bug when to pick to label by software
• update plotting gallery for new code refactoring
• snapshots not directory specific
• add tests of multiple result files with mzML loader
• fix: failing tests based on OS
• remove unneeded dependency
• add multi-result file tests for sqmassLoader
• add test throw error if sqMass with DIA-NN
• fix bugs with new changes
• fix: streamlit interface with new refactoring
• fix result file reading with streamlit
• feature: add custom logger
• select specific runs to get transitions/features from
• bug with loading transition data
• load DIA-NN when Precursor.Mz not found
• fix: add tests for new "select runs" functionality + bug fixes
• update snapshots
• typing for python 3.9
• updates docs for new codebase
• control when to output IM column
• bug fixes
• update tests
• fix typo
• better check for if streamlit is running
• fix: update quickstart to showcase multiple files

Uncategorised!

• Merge branch 'test/add_tests' into refactor/resultsPlotting
• [FEATURE] autodetect .TSV results type
• Rename GenericLoader -> ResultsLoader
• [FEATURE][TEST] load multiple result files in loader
• [REFACTOR][FIX] SqMassLoader+MzMLLoader new interface
• Add access methods getIdentifications
• Add getExperimentSummary
• Merge branch 'dev' into refactor/resultsPlotting
• Merge branch 'dev' into refactor/resultsPlotting
• Merge branch 'dev' into refactor/resultsPlotting
• Merge branch 'dev' into refactor/resultsPlotting
• add pep, qvalue and p value as valid columns
• Merge branch 'dev' into refactor/resultsPlotting
• fix tests
• Update tutorials for refactored changes
• Merge branch 'dev' into refactor/resultsPlotting
• Merge branch 'dev' into refactor/resultsPlotting
• bug fig