Jim Henderson

Thanks for the wonderful tool. Recently I ran Salsa2 with `arg -i 10` and it terminated before that number of iterations. Though there were good results, there were also several...

seqtk telo -m works partially with 8mer wasp telomere

5

Thank you for adding the telo command, it is much faster than the grep_telomere script I had put together. I was hoping to use this with a wasp assembly to...

possible regression in using HiC reads in --h1 --h2

5

Version hifiasm_0.19.8-r603 using --h1 --h2 is stopping at a Partition step after the hic.p_ctg gfa is written. Last version that we had run that worked for us was hifiasm_0.19.5-r590 so...

Having run etp mode on a genome with braker.pl version 3.0.3, occasionally **gmst** exon, CDS and start codons have the same coords for begin and end (field 4 equals field...

question about agp type N GAP_SZ 200

3

Thank you for the yahs scaffolding tool, unprecedented in speed and quality of results. We've seen a few telomere merges but otherwise it greatly reduces the need for our JBAT...

I'm using protein mode compleasm in the BRAKER 3.08 pipeline and have a script to annotate the BUSCOs in the braker.gff3 output. I've found the counts do not quite agree...