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                                            Jim Henderson

seqtk telo -m works partially with 8mer wasp telomere

We do have a HiFi assembly made with hifiasm using PacBio long reads. And, as you say, the test text was a very truncated view of the Chr, thanks for...

seqtk telo -m works partially with 8mer wasp telomere

At the bottom or very near bottom. I made a 8Mbp test file named tst2 with the CCCAATAA at top TTATTGGG at bottom and revcomp version tst2_rc to flip them...

possible regression in using HiC reads in --h1 --h2

I reran with same HiFi, HiC inputs as on hifiasm 0.19.5-r590 using hifiasm **0.19.6-r595** and **0.19.7-r598** and ***h1, h2 gfa files were created*** with both these versions. As a reminder...

question about agp type N GAP_SZ 200

Chenxi, I see some improvements you are making these days. I was wondering if you were still considering changing the GAP_SZ to 100 or if there is some issue with...