Jon Belyeu

Very helpful feedback, thanks! We'll take this into consideration as we plan future versions. Hope samplot serves you well!

Hi Lukas! This behavior is intended to prevent small spikes in coverage from throwing off the scale of overall coverage plots. Can you share why this is an issue, just...

looks like you're using a very old version of samplot. I'd recommend installing from conda (`conda install -c bioconda samplot`). In addition to fixing many bugs, that will install samplot...

in my version the yaxis still gets trimmed a tiny bit with that arg, so I've pushed a change to fix it in samplot version 1.0.19. The new version will...

Not sure. I'd guess there's an issue with your conda installation (conda is fragile, I find myself re-installing due to similar problems regularly). You could try specifying the version on...

I've added changes similar to these in v1.0.20. Please lmk if that version solves your issues and thanks for pointing them out!

I'll include a catch for cases where the confidence interval is outside the genomic range in another release soon. Generally we don't want to support incorrectly formatted VCFs as that...

I've added this feature in samplot v1.1.3 (now available on conda). Use the `--max_coverage` arg to set a value. Be careful with this, of course, as it could hide important...

There are a number of default filtering options in `samplot vcf` which remove some SVs. The optional flag `--debug` can be added to your command and will print the reason...

Sorry about the late response and glad you're having success now. The output you're seeing is informative rather than indicating error. It means that some of the variants in the...