samplot
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Warning when running Samplot vcf
Used command
samplot vcf -v SV.sort.vcf -O png -b data.bam --important_regions gene_region.bed -d results --sample_ids "data.bam" --gff Homo_sapiens.GRCh38.100.chr.gff3.chr.gz --command_file samplot_commands.sh
I have results (but the gff annotations are not shown), the region should contain 7 DEL and 5 INS, only 6 deletions exist in the index.html file.
There is this warning:
samplot.py:2951: UserWarning: FixedFormatter should only be used together with FixedLocator
curr_ax.set_xticklabels(labels, fontsize=xaxis_label_fontsize)