Joshua Shapiro

schema build incorrectly reports config mismatch with $projectDir

3

### Description of the bug When a config variable uses `${projectDir}` in its definition, the `nf-core schema build` tool reports that the pipeline config does not match the schema and...

Add n.expected.cells estimation to emptyDropsCellRanger

4

As of Cell Ranger 7.0, the initial expected number of cells is estimated by a fairly simple *OrdMag* algorithm if not specified by the user, as described in the [10X...

Download only subdirectory for GitHub packages when appropriate

3

When installing a package from GitHub where the package is in a subdirectory of the main repository, `pak::pkg_install()` downloads the entire repository. For some repositories this may be a non-issue,...