Joshua Shapiro

I just want to register my support for this feature. I often do partial development on a machine that does not have my data files, or might not have a...

I just found this issue when investigating whether we would easily be able to adapt our pipeline to accommodate BD Rhapsody data. It looks like the R1 sequence structure (as...

As of Docker Desktop for Mac `4.16.2` (or possibly a bit earlier), there is now an option to run `amd64` images in Rosetta. This seems to allow older versions (and...

Rather than a hybrid install, I occasionally use the following set of commands to wholly switch a conda environment to use the `osx-64` environment. ``` CONDA_SUBDIR=osx-64 conda env create -n...

My read of the algorithm is something like this: ``` ordMagLoss

It does not seem that the `git::` remotes in `pak` allow subdirectories? I did test whether `remotes::install_git` with a subdirectory specified used a sparse checkout, but it does not seem...

Or rather, maybe a sparse checkout isn't quite what I want, as that seems to still download the whole `.git` folder, which can be large.

Thank you for your response. I wanted to note that the example that I used above was from the `nf-core/rnaseq` pipeline: https://github.com/nf-core/rnaseq/blob/b89fac32650aacc86fcda9ee77e00612a1d77066/nextflow.config#L57 A number of other `nf-core` pipelines also use...