James Casbon

How far did you get with: http://pyvcf.readthedocs.io/en/latest/FILTERS.html On 12 December 2016 at 11:54, Hania Kranas wrote: > Could you please explain how the scripts in pyVCF/scripts work? (How to >...

Someone needs to add the 4.3 support. I would start by adding a test case with the new features and then unit testing each one. PRs welcome! On 5 June...

Here is my current thinking. We don't support fetching less than a single line of vcf, and I don think we need too. So perhaps when we parse a line...

I have a prototype of this working for the header using funcparserlib. I think it is quite nice, you have a separation of concerns: a tokenizer, grammar and object model....

Have a look at this gist... https://gist.github.com/jamescasbon/4960150

@martijnvermaat any thoughts?

Good spot, Lenna! Looks like it has been around for a while: https://github.com/jamescasbon/PyVCF/blob/master/vcf/parser.py#L589 The correct behaviour for the writer is that it writes the same number of fields as it...

This is, I believe, a very hard requirement. I think it needs a source map plus change tracking. VCF writing was really not proper, so this would possibly need a...

I don't have a windows host. Is there a service that can do this for me?

Needs #52