Jacqui Keane

icon location Cambridge, UK icon location Former Head of Pathogen Informatics at Wellcome Sanger Institute. Lead development of several software applications for the analysis of pathogen genomic data.

Results 3 comments of Jacqui Keane

Skip whole genome records

Any chance we can get this merged (even without tests!) and a new release to allow people to use this with the ncbi acquired gene database?

pipeline fails when parameter trim = false

I am experiencing the same issue. Any plans to add a fix to allow the pipeline to be run without the trimming/fastp step?

Trying to use SSpace-Long Read

Could you provide us with the exact command that you ran?