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Published 20 hours ago • verified publisher icon sanger-pathogens

Skip whole genome records

Open antunderwood opened this issue 2 years ago • 1 comments

In order to prepare the NCBI acquired gene database, the records that are whole genome as determined by a prefix of 'AP' should be skipped

antunderwood avatar Jan 31 '22 15:01 antunderwood

Hi Anthony, happy to merge this in, just wondering if there were any tests that would profit from adapting? If not happy to go ahead.

puethe avatar Jan 31 '22 17:01 puethe

Any chance we can get this merged (even without tests!) and a new release to allow people to use this with the ncbi acquired gene database?

jacquikeane avatar Apr 06 '23 07:04 jacquikeane

Hi @jacquikeane , I am no longer working at the Sanger and do not have permissions on the repo anymore. You'll have to contact the team. Cheers Christoph

puethe avatar Apr 08 '23 20:04 puethe

Am merging. @jacquikeane new release is another thing though - I've no idea what the release process is for this repo now! I'm going to look at updating to use github actions

martinghunt avatar Apr 11 '23 08:04 martinghunt