Jake Pennington
Jake Pennington
@afmcelroy The UserWarning you mentioned is not a problem as long as you're getting good sorting results. It's just there as a debugging tool in case other problems pop up...
The default settings should be sufficient. You should not need to specify `dmin`. You can set it to 20 if you want, but the default should already do that for...
Thanks for catching this, we're deciding on how to fix it. If you want to be able to sort in the meantime, since you mentioned you're comfortable modifying code, you...
Okay thanks, looking into it. Just to clarify, are you using the default settings to sort this? I.e. no changes to batch size, detection thresholds, etc.
Re: the last error you described, I have a fix working. I'll push it after I test a few more things (probably today). The problem was caused because the large...
I'm keeping memory optimization on the TODO list, but just FYI: There's a new `clear_cache` option for `run_kilosort` with the latest version, which adds a `torch.empty_cache` call in the clustering...
Hello @canfora01, have you tried using Kilosort4 yet? Do you encounter the same issue?
When you say Kilosort4 "did not work," what happened exactly? Do you have some print output you can paste in here, or screenshots?
That looks related to some bugs that have been fixed recently. Can you please try installing the latest version and see if you still run into issues?