Jack Humphrey comments

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                                            Jack Humphrey

Installation probelm r/4.3.1

Hi Jess. Please try again with an older version of R if you have it, R 4.0 or earlier. We're aware of this issue, it's a problem for a lot...

error while running leafcutter_cluster_regtools.py - "IndexError: list index out of range"

it looks like your chromosomes aren't being recognised. What genome build are you using? What happens when you include the --checkchrom flag?

Enhancement suggestions - leafcutter and leafviz results exports

Hi all, This is something I've neglected for too long, my apologies. I now maintain a standalone Leafviz R package that works on Mac and Windows for users to work...

Unable to install leafcutter R 4.2.1

The following worked for me recently on R 4.2 on an M1 macbook: ``` install.packages("remotes") remotes::install_github("stan-dev/rstantools") remotes::install_github("davidaknowles/leafcutter/leafcutter", ref = "psi_2019") ```

Error: Failed to install 'unknown package' from GitHub

@davidaknowles we should really replace this example with remotes instead of devtools, much quicker installation.

sQTL annotation with leafviz

Hi Cindy, we don't have that feature right now, but if you're interested in visualising your sQTLs then you can look into running sqtlviztools, a rough R package for doing...

Error in differential_splicing(counts, numeric_x, confounders = confounders, : unused arguments (init = opt$init, seed = opt$seed).

Hi both, we think this is due to the stan installation. see #87 for latest installation instructions

Jack Humphrey