João Sequeira

Retrieve paired-end reads with their mates

1

Greetings! I wanted to know if, when retrieving paired reads with seqtk from a list of names,there is a way to retrieve the paired mate as well. Thank you for...

Greetings! I have installed CD-HIT with ```conda install -c bioconda cd-hit``` and can't find the ```psi-cd-hit.pl``` executable. Running ```find ~/anaconda3/envs/hmm -name "psi*"``` finds no such file, has this been removed...

HTML renders in the browser but not with ReactHtmlParser

2

Greetings! I have a React app, where I am trying to render an HTML file using ``` import React, { useState } from 'react'; import ReactFileReader from 'react-file-reader'; import {DashboardLayout}...

As stated [here](https://github.com/compomics/searchgui/issues/300#issuecomment-831186436), in the latest versions of SearchGUI and Peptide-Shaker, I'm getting less identifications

kegg_link gives different EC numbers depending on the order of inputted IDs

3

### Setup I am reporting a problem with Biopython version, Python version, and operating system as follows: ``` 3.11.0 | packaged by conda-forge | (main, Jan 14 2023, 12:27:40) [GCC...

Unresolved reference 'snakemake'

3

I never got, on my MacBook Pro M2, snakemake recognized. Is this working as designed? The pipeline runs fine. SnakeCharm version: `2023.2.1`

It is an optional argument, if not set it will follow the previous behavior results folder is still always created closes #11

Greetings Does cdd2cog have an output argument for deciding where to export results, or do they have to go the the ./results directory always?

Ant build of devel branch fails

31

Greetings I used VizBin in the past, and it has never disappointed. It is a very good tool to visualize a spatial dispersion of the contigs, and very easy to...

Follow up from another [issue](https://github.com/bioconda/bioconda-recipes/issues/23424). QUAST cane be installed for Python 3, but the corresponding [recipe page](https://bioconda.github.io/recipes/quast/README.html) shows it is limited to Python 2. According to @mbargull > Apparently, this...