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Published 20 hours ago • verified publisher icon iprada

Repetitive circular DNA guideline

Open MJoseMo opened this issue 9 months ago • 1 comments

Hi, I would like to ask what parameters, we should take into account when detecting repetitive circular DNA. The generated bed file does not have a defined number for the split_reads column (.) and does not have a defined value in column 11 coverage_continuity (NA). Therefore, I would like to ask if default values to filter the output of circle-map would be appropiate (ex: score >50) or other aspects should be taken into consideration.

MJoseMo avatar Feb 19 '25 16:02 MJoseMo

see https://github.com/iprada/Circle-Map/issues/77

iprada avatar Feb 19 '25 17:02 iprada