Ioannis Magkanaris
Ioannis Magkanaris
In the CI we build `CoreNeuron` `SoA` with `OpenMP` enabled https://github.com/BlueBrain/CoreNeuron/blob/76026e0b9820d96524ea3dc0e5c1d9f738e1f55a/tests/jenkins/install_coreneuron.sh#L57 and we run the `SoA` tests with https://github.com/BlueBrain/CoreNeuron/blob/76026e0b9820d96524ea3dc0e5c1d9f738e1f55a/tests/jenkins/run_corenrn.sh#L17. I see though that for some reason when `CoreNeuron` runs it...
Edit: These values exist in the `globals.dat` file from the `coredat` files but for some reason are not set properly in CoreNEURON
It seems like this issue doesn't influence the spikes of the simulation tested with small circuits of the M1 and S1 NetPyNE models. Still I have created a draft PR...
Hello @salvadord Just a quick update on this ticket. First, I run the circuit compiling `NEURON` with `gcc 8.3.0` and `CoreNEURON` with `NMODL` generating the `ISPC` backend code and the...
Hello @salvadord , For now it's fine. I will work the following days on the issues I encountered and I will let you know if anything is needed 👍
The following was also communicated to Salvador but I am sharing this here for backup and future reference. We have managed running the M1 model with CoreNEURON and I have...
> Just a thought, would it be beneficial to add tests in a prequel PR? This way we'd have a `base` to compare against? I think that's a good idea....
The source of this issue was that `CoreNEURON` in online mode was using `cell_permute` `1`, which generates different results than `NEURON`. https://github.com/neuronsimulator/nrn/commit/674dbac2390529e24071488563b3201f004279a3 I update my branch in `netpyne` to use...
I am not sure whether this fixed the issue. I think it would be useful to run the test added in this PR https://github.com/BlueBrain/CoreNeuron/pull/299 and see whether there is still...
Hello @nrnhines We were trying to run the `nrntraub` test from https://github.com/pramodk/nrntraub/tree/icei with threading enabled in `NEURON` to launch `CoreNEURON` from `NEURON` and test `OpenMP`. After cloning the repo I...