pangenome topic
PPanGGOLiN
Build a partitioned pangenome graph from microbial genomes
get_homologues
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
StrainFLAIR
Strain-level abundances estimation in metagenomic samples using variation graphs
pan-Zea_construct
Workflow to construct linear representation of pan genome from deep WGS data and public assemblies
pangraph
A bioinformatic toolkit to align genome assemblies into pangenome graphs
pangenome
Renders a collection of sequences into a pangenome graph.
bovine-graphs
Integrate multiple genome assemblies into a pangenome graph
panpop
Application of pan-genome for population
pagoo
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
panphlan
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples