microbial-genomics topic
bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
PPanGGOLiN
Build a partitioned pangenome graph from microbial genomes
FastANI
Fast Whole-Genome Similarity (ANI) Estimation
nonpareil
Estimate metagenomic coverage and sequence diversity
ANIclustermap
A tool for drawing ANI clustermap between all-vs-all microbial genomes
MGCplotter
Microbial Genome Circular plotting tool for comparative genomics using Circos
pyGenomeViz
A genome visualization python package for comparative genomics
bac-genomics-scripts
Collection of scripts for bacterial genomics
seeka
Get microbial sequence data easier and faster