next-generation-sequencing topic

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

philres

Rare variant test software for next generation sequencing data

zhanxw

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

nextstrain

Rapid large-scale prokaryote pan genome analysis

sanger-pathogens

Finds SNP sites from a multi-FASTA alignment file

sanger-pathogens

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

sanger-pathogens

A tool to circularize genome assemblies

sanger-pathogens

Antimicrobial Resistance Identification By Assembly

sanger-pathogens

Java utilities for Bioinformatics

lindenb

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

bioinformatics-centre