Nextstrain

Nextstrain build for novel coronavirus SARS-CoV-2

nextstrain

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

nextstrain

Pipeline components for real-time phylodynamic analysis

nextstrain

Web app for visualizing pathogen evolution

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The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Ausp...

nextstrain

RethinkDB database to support real-time virus analysis

nextstrain

Nextstrain build for mpox virus

nextstrain

A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

nextstrain

The Nextstrain website

nextstrain

Scripts. config, and snakefiles for seasonal-flu nextstrain builds

nextstrain