molecular-dynamics-simulation topic

A solar system simulator with Verlet, using OpenGL for displaying.

aromanro

pKa estimates for proteins using an ensemble approach

Becksteinlab

RMD_digging is aimed to provide pre-processing and post-processing tools for the reactive molecular dynamics (ReaxFF) simulations based on MATLAB language, including formatting the reactive force fiel...

dadaoqiuzhi

RadonPy is a Python library to automate physical property calculations for polymer informatics.

RadonPy

LAMMPS tutorials for both beginners and advanced users

lammpstutorials

Web Platform made with Python and NextJS for automating GROMACS simulations

LABIOQUIM

Sparse Gaussian Process Potentials

amirhajibabaei

:zap: general purpose coarse-grained molecular dynamics simulation package

Mjolnir-MD

a logistics and persistence engine for the analysis of molecular dynamics trajectories

datreant

Command line interface for MDAnalysis

MDAnalysis