molecular-dynamics-simulation topic

Flexible implementation of cell lists to map the calculations of particle-pair dependent functions, such as forces, energies, neighbor lists, etc.

m3g

Sample codes for my book on molecular dynamics simulation

brucefan1983

Julia language implementation of the Cell Lists algorithm to solve the fixed-radius near neighbors problem including serial and multithreaded algorithms.

jaantollander

A python framework to run adaptive Markov state model (MSM) simulation on HPC resources

markovmodel

MolSSI SARS-CoV-2 Biomolecular Simulation Data and Algorithm Store

MolSSI

Corrections to the text of the book "Computer Simulation of Liquids" by Michael P. Allen and Dominic J. Tildesley (2nd edition, Oxford University Press, 2017)

Allen-Tildesley

Automated omics-scale protein modeling and simulation setup.

choderalab

MDAnalysis tool to calculate membrane curvature.

MDAnalysis

Real time molecular dynamics in the browser using LAMMPS

andeplane

A program implementing event driven molecular dynamics for hard smooth spheres, using OpenGL for displaying

aromanro