molecular-dynamics-simulation topic

分子シミュレーションの理論や関連するトピックをまとめたノート

MasatakaYm

Isra3l

The d-SEAMS C++ core engine

d-SEAMS

ls1-MarDyn is a massively parallel Molecular Dynamics (MD) code for large systems. Its main target is the simulation of thermodynamics and nanofluidics. ls1-MarDyn is designed with a focus on performa...

ls1mardyn

PCA and normal mode analysis of proteins

RUBi-ZA

MiniMD Molecular Dynamics Mini-App

Mantevo

A codebase for classical molecular dynamics (MD) simulation setup and results analysis.

HouGroup

CHAP is a tool for the functional annotation of ion channel structures:

channotation

To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.

rjdkmr

PyRod - Tracing water molecules in molecular dynamics simulations

wolberlab