Mark Keller

Hi @lee-t thank you for reporting this issue, I think the are multiple things going on here. I believe the major issue is: > Loading failed for the with source...

Thanks, is this an error that occurs after converting to HTML using nbconvert? If so then I believe it would still be expected until https://github.com/jupyter/nbconvert/issues/1900 is resolved. Aside: @manzt in...

I am going to merge this so the URLs work for the tutorial. I will work to convert some of the comments to issues

@mccalluc have you made any progress in reliably reproducing it? Would you be able to provide information about the versions of Python and Jupyter / JupyterLab? If you are able...

> We do not have a reliable reproducer. Does this mean the exception does not occur reliably, so the widget renders some of the time? Or do you see the...

When I open a workspace for [HBM989.VVXT.224](https://portal.hubmapconsortium.org/browse/dataset/35ea0ff39fc1bd6846df15860dead4d3) by adding `.ws.ipynb`, the top notebook cell contains the line ```py !pip install vitessce[all]==1.0.9 ``` For me, this line fails because [`all` includes...

There seems to be an underlying issue with the workspace, in that it cannot communicate with any ipywidget in the same notebook execution where the `ipywidgets` package is installed. I...

I think the numbering of the files is a good idea

SNARE-Seq datasets from HuBMAP portal: - https://portal.hubmapconsortium.org/browse/dataset/9ad464b54a0087db94bfca405d4ad968 - https://portal.hubmapconsortium.org/browse/dataset/91a46cd9228c04e77df05536a036824b

We got here by moving the dependencies in https://github.com/vitessce/vitessce-python/pull/143. I have no issues with either the current `setup.py` model or the separate requirements file model (with a slight preference for...