Mark Keller
Mark Keller
**User story** The field `axes` of `multiscales` in OME-NGFF changed from v3.0 to v4.0. In 3.0 axes was an array of strings like `["c", "z", "y", "z"]` but in 4.0...
**User story** I created a 3-channel 8-bit Tiff using ImageJ and selected "Grayscale" as the color mode when I created the hyperstack. However Viv (via Vitessce) thinks it is an...
## Description > What was changed in this pull request? This pull request adds the properties `trackUid` and `viewUid` to the object that is published on wheel events (that have...
_Commit_: a426e08 #### Steps to reproduce 1. Run the gene annotations track tests or check this travis log error https://travis-ci.org/github/higlass/higlass/builds/661547809#L1163 #### Observed behavior - `Script error. thrown` for the "changes...
## Description > What was changed in this pull request? Buttons for selecting the upper-right or lower-left extent were added to the center square of the add track position pop-up...
## Description > What was changed in this pull request? This pull request updates the `setTheme()` function to check for `prefers-color-theme: dark` if no theme (or invalid theme) has been...
_Commit_: b6e5b8e #### Steps to reproduce 1. Visit https://docs.higlass.io/track_types.html#d-heatmap 2. Click a link under the "Demo" heading of the 1D Heatmap section. #### Observed behavior - 403 Forbidden #### Expected...
v1.2.0 and v1.2.1 did not deploy via github actions: - https://github.com/vitessce/vitessce/runs/8122998915?check_suite_focus=true - https://github.com/vitessce/vitessce/runs/7505874619?check_suite_focus=true due to `FATAL ERROR: Reached heap limit Allocation failed - JavaScript heap out of memory` during `npm...
Fixes #1128 Fixes #1311 Demo: https://s3.amazonaws.com/vitessce-data/demos/2022-08-24/2f5521c/index.html Docs: http://vitessce-data.s3-website-us-east-1.amazonaws.com/docs/2022-08-24/2f5521c/index.html Blog post: http://vitessce-data.s3-website-us-east-1.amazonaws.com/docs/2022-08-24/2f5521c/blog/obs-by-feature-update/ This PR adds Vitessce examples that load data processed by the scripts at https://github.com/vitessce/vitessce-python/pull/201 ### TODO - [ ]...
Based on #1136 Toy example (3 cells by 4 genes) at http://localhost:3000/?dataset=just-heatmap For ground truth / current implementation, use branch https://github.com/vitessce/vitessce/tree/keller-mark/heatmap-dev or this screenshot: ![Screen Shot 2022-02-04 at 2 16...