bids-validator
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bids-standard
Validator for the Brain Imaging Data Structure
When running tests it would be nice to get a readout of every rule in the schema that was and wasn't hit over all tests run.
For validator parity there's an issue with respect to this list of "non-schema" issues in the validator and the the errors list in the schema: https://github.com/bids-standard/bids-validator/blob/master/bids-validator/src/issues/list.ts https://github.com/bids-standard/bids-specification/blob/master/src/schema/rules/errors.yaml Need a test...
# Description For Philips datasets converted to a BIDS dataset via dcm2niix, there are no "TotalReadoutTime" but an "EstimatedTotalReadoutTime" since it can be approximately estimated by dcm2nixx by making some...
Currrently working on a dataset where a typical subject looks like this. ```bash $ tree sub-001 sub-001 ├── ses-mri │ ├── anat │ │ ├── sub-001_ses-mri_T1w.json │ │ └── sub-001_ses-mri_T1w.nii.gz...
bids-validator v1.9.9 on a dataset with PET images. As per [BIDS doc for PET](https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/09-positron-emission-tomography.html), the field [ReconFilterSize](https://bids-specification.readthedocs.io/en/stable/glossary.html#objects.metadata.ReconFilterSize) is required only when [ReconFilterType](https://bids-specification.readthedocs.io/en/stable/glossary.html#objects.metadata.ReconFilterType) is not "none". On my data, there is...
Hello! I have a dataset that contains the `chunk` entity, which is valid in v1.8.0 (see [here](https://bids-specification.readthedocs.io/en/stable/appendices/entities.html#chunk)). However, I am getting a bids-validator error: [test_bids_errors.txt](https://github.com/bids-standard/bids-validator/files/10397495/test_bids_errors.txt) Dummy dataset for testing: [test_bids.zip](https://github.com/bids-standard/bids-validator/files/10397493/test_bids.zip)...
Following up on the thread https://github.com/bids-standard/bids-validator/issues/671 , version 1.1.1 continues to have this issue. Certain files that look good and is viewable in a viewer like ITK-SNAP (see attached) are...
Dear all, I tried to use the BIDS validator `1.9.9` with the option `-s "v1.6.0"` to use a specific schema version. However, it is failing with the error below. **Error**...
We've found a dataset on OpenNeuro with unescaped backslashes in their `bold.json` files. The dataset validates, but attempting to read the files with `jq` or Python's `json.load` results in errors....
It seems the "Available Modalities" reported are no longer broken down by specific types of MRI contrast (T1w, BOLD, DWI etc.) but it only says MRI as in the screenshot....
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Validator for the Brain Imaging Data Structure