Mostafa Y. Abdel-Glil

Hi, I am not sure if this could help but you may try `python -m pip install tensorflow --user`

**UPDATE** python -m pip install tensorflow==1.15 --user

Hi, @tseemann @andrewjpage , I have run iqtree on an alignment file (160 sample with 201,095 SNPs). The composition test returned with 16 strains that failed the composition chi2 test....

Hi, I have the same issue here. Outputting the largest amplicon only was misleading in my case, as I was looking for an amplicon within **repititive RNA genes** of an...

same issue here `FileNotFoundError: [Errno 2] No such file or directory: 'temp_checkm_dir/storage/tree/concatenated.tre'` command line: `checkm lineage_wf -t 8 -x .fasta temp_checkm_dir --tab_table --file checkm_genome_results.tsv` versions: CheckM v1.2.2 Python 3.10.12 executed...

@d-j-e thanks a lot for your answer. It worked for me with some tweaking. However, the target SNP I was looking for was not reported by RedDog. May be that...

I am aware of it. I thought it might be easy to have this implemented in `seqkit` as a new subcommand, so that I have all what I need in...

Hi @tijyojwad In the bam file, I found two duplicated id. They seem to be in the skip folder. Below are the info associated with the `fn:Z:` tag. Strange to...

@olawa @tijyojwad Thanks for the clarifications. I used dorado version 0.5.0, MInKNOW version 23.07.12 (with Guppy 7.1.4)