Kalin Nonchev
Kalin Nonchev
Hello, Thanks for the great package! I saw that you are aware of the problem that you are banned when you query information for multiple stocks in a short period...
Hello, I am trying to install the package using clone and conda. These steps were successful: ``` git clone https://github.com/DeepGraphLearning/graphvite cd graphvite conda install -y --file conda/requirements.txt mkdir build ```...
Hi, thank you for developing this package! I am trying the following: ```python ebm = ExplainableBoostingClassifier(random_state=seed) ebm.fit(X_train, y_train) ebm_global = ebm.explain_global() show(ebm_global) ``` which results in: ``` Unable to connect...
Hello, thank you for the package. Would you also offer support for Explainable Boosting Machine from [InterpretML](https://interpret.ml/)? It is similar to Gradient Boosting Machine of sklearn. Thank you in advance!...
Hello, `RunAzimuth` currently uses a hardcoded reference of the `homolog.table` in `ConvertGeneNames` which relies on an internet link and assumes an internet connection is available. https://github.com/satijalab/azimuth/blob/243ee5db80fcbffa3452c944254a325a3da2ef9e/R/azimuth.R#L103 Allowing to specify the...
Hi, I would like to use `RunAzimuth` offline/ without internet connection. For this, I have downloaded already the ref.Rds and idx.annoy files I need. However, here https://github.com/satijalab/azimuth/blob/243ee5db80fcbffa3452c944254a325a3da2ef9e/R/azimuth.R#L103 the homologs link...
Hello, I noticed that in the case of annotated multiallelic VCF where annotation for each alternative is stored in the INFO field, `variant.INFO.get("annotation")` would only pick the first occurrence. Example:...
Hi spatialdata team, Thank you for your work on this important project! We are currently generating multiple terabytes of multi-modal digital spatial transcriptomics data, including H&E images, gene expression, spatial...
Hello, Thank you for your work. I might have missed it, but I couldn’t find the training setup you used to fine-tune CLIP (e.g., batch size, effective batch size, precision)....
New methods for spatial traanscriptomics multi-modal integration and gene prediction from H&E images
Hello, Thank you for maintaining this valuable resource! I’ve added a few recent methods focused on multi-modal integration of transcriptomics, spatial, and pathology data, as well as a new approach...