RunAzimuth offline with homolog.table path reference

Open KalinNonchev opened this issue 2 years ago • 4 comments

Hi,

I would like to use RunAzimuth offline/ without internet connection. For this, I have downloaded already the ref.Rds and idx.annoy files I need. However, here https://github.com/satijalab/azimuth/blob/243ee5db80fcbffa3452c944254a325a3da2ef9e/R/azimuth.R#L103 the homologs link is hardcoded and I don't see an option to specify a local copy of the homolog.table file from RunAzimuth. Could you help me with this?

Thank you in advance!

Best,

Apr 03 '24 16:04 KalinNonchev

Hi, I created a pull request regarding this issue: https://github.com/satijalab/azimuth/pull/218

Apr 04 '24 05:04 KalinNonchev

@rsatija @saketkc @andrewwbutler @keller-mark could you look into this when you have time? Thank you!

Apr 08 '24 09:04 KalinNonchev

@Gesmira could you look into this as well? I think it should work. Thank you

Apr 29 '24 15:04 KalinNonchev

Same issue here

Oct 14 '24 15:10 yzh37545