Raychaudhuri Lab

Fast, sensitive and accurate integration of single-cell data with Harmony

immunogenomics

Efficient and precise single-cell reference atlas mapping with Symphony

immunogenomics

:ear_of_rice: Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.

immunogenomics

Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-cell datasets.

immunogenomics

HLA-TAPAS pipeline for HLA association and fine-mapping studies

immunogenomics

Code for creating cell-type-specific regulatory element annotation files

immunogenomics

Methods to compute Local Inverse Simpson's Index (LISI)

immunogenomics

Fast Wilcoxon and auROC

immunogenomics

Code to run the scHLApers pipeline for personalized single-cell HLA quantification

immunogenomics

Trans-association between HLA and TCR-CDR3

immunogenomics