Immanuel Abdi
Immanuel Abdi
Interestingly enough, there's been some recent work doing exactly that (Sparse flash attention; https://doi.org/10.48550/arXiv.2306.01160). Could be very promising in terms of reducing training time for future foundational genomic language models....
Also having this issue, but occuring 100% of the time. Running with n_jobs = 1, cuml SVC. Memory usage steadily increases with every new candidate, until eating up 24 GB...
I think this might be harder than one would expect, since the current triton implementation (only one that allows for AliBi) is pretty well known to be broken, unless you...
Closing due to inactivity
Closing due to inactivity
Closing due to inactivity
Closing due to inactivity
There are a few more tests to be added that directly compare writing insertions from fragments in ArchR vs BPCells. I might just copy the output files to eliminate the...
I think I'm happy with the current state, but please let me know if you see any more glaring changes I should be making. It will be a little bit...
Ok it should be ready! I added in the test comparing Archr and BPCells results. The only change required is setting `devtools::load_all()` to target your bpcells/archr install.