Immanuel Abdi comments

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                                            Immanuel Abdi

Allow the use of relative paths in open_matrix_dir/open_fragments_dir

Hi @bjmt Think this is pretty possible, Ill see what I can do! No timeline for when I can get on this just yet. Immanuel

`qc_scATAC()` can try to quantify negative ranges

Good catch. I'll try to get a fix either today or tomorrow. Thanks!

`qc_scATAC()` can try to quantify negative ranges

Let me know if this has fixed the problem. Immanuel

ArchR complains about `nabor` package not available even if `nabor` is loaded

Hi @JackieMium! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and...

Iterative overlap for peak merging

Hi @plbngl! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and...

Error: addGroupCoverages

Hi @zeyan-0717! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and...

ArchR used for single sample .tsv file

Hi @IqRaZaFaR16! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and...

createArrowFiles has encountered an error, checking if any ArrowFiles completed

Hi @LoRner22! Thanks for using ArchR! Please make sure that your post belongs in the Issues section. Only bugs and error reports belong in the Issues section. Usage questions and...

MatrixGeneExpression.R force parameter not properly in if

Thanks for the heads up @eliascrapa, I'll try reproducing on my end but probably won't be until eow.

Error in H5Fopen(file, flags = flags, fapl = fapl, native = native) : HDF5. File accessibility. Unable to open file.

Hi @IqRaZaFaR16 , have you tried from scratch with new h5 files, and new arrow files entirely? Have you also tried creating the ArchR project with `copyArrows = FALSE`? Just...