Daniyar Karabayev

icon company FIMM icon location Helsinki, Finland icon location PhD candidate in @MLBioMed at FIMM, University of Helsinki. Genomics, epigenetics, machine learning

Results 3 comments of Daniyar Karabayev

MissingRuleException error

Hi! I have the same problem. Have some of you managed to solve the issue? snakemake all is not working edit: I've tried to execute snakemake without 'all' and then...

samplesheet input is not detecting entire values in sample column

Thank you!! I've spent a week trying to figure out why the pipeline is strangely concatenating my input fastqs. Could you please add this info regarding naming conventions to README...

Pipeline requires 72GB of RAM, even to test.

@mpiersonsmela I've tested the pipeline and my nextflow report shows high RAM usage particularly by the deduplication step. I'm not sure if it's optimal but hope it helps ![Screenshot 2024-08-07...