Chris Seymour

Use `__main__.py` so the module can be invoked with `python3 -m asitop`.

Added step for when upstart script fails to register. http://askubuntu.com/questions/299371/correct-way-to-install-a-custom-upstart-service

[pygenomeworks] logger chatter.

2

When creating a `CudaPoaBatch` object a default logger is initialized and outputs to `stderr`. ```python >>> from genomeworks.cudapoa import CudaPoaBatch >>> CudaPoaBatch(1000, 1000, 3724032) GenomeWorks logger not initialized yet. Initializing...

Support for Signed Types Integrated in the CODECs

39

I have an interest in using streamvbyte with signed types (specifically int16) and have created a Python wrapper which supports this however the overhead is quite large as you would...

Segfaulting tests with Catalina

2

Running the test suite under the latest 10.15 beta results in a segfault. ``` $ python setup.py test running pytest Searching for Pillow Best match: Pillow 6.1.0 Processing Pillow-6.1.0-py3.7-macosx-10.14-x86_64.egg Searching...

Log accurary with CoreML3

1

I was looking at adding some element-wise operations *(`Neg`, `Abs` and `Log`)* and noticed the results for `Log` seem off? ```python import onnx import torch import onnx_coreml import onnxruntime import...

GRU support with linear_before_reset

10

Similar to #227 but without adding the backend, uses the [CudnnCompatibleGRUCell](https://www.tensorflow.org/api_docs/python/tf/contrib/cudnn_rnn/CudnnCompatibleGRUCell) implementation in TensorFlow instead.

Use of num_events_template [legacy]

1

Hey @roblanf Events are no longer relevant with modern basecallers and Guppy considers all event fields in the [sequence summary as legacy](https://community.nanoporetech.com/protocols/Guppy-protocol/v/gpb_2003_v1_revs_14dec2018/input-and-output-files). A cursory look at the code suggests only...