Chris Seymour

@lh3 from our internal benchmarking we find speed and downstream accuracy are maximized with `-x map-ont -k19 -w 19 -U50,500 -g10k`.

> If the map-hifi scoring also works Unfortunately not, the `map-hifi` scoring leads to both fewer mapped reads _(~3%)_ and small regressions in SNP/INDEL calling. It's possible these regressions could...

Added https://github.com/lh3/minimap2/pull/1048

@fergsc is this model a custom design of your own?

The current training data is really outdated - I will look to get this updated.