Erqiang Hu comments

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                                            Erqiang Hu

对小鼠进行kegg注释，无法得到注释结果。

请确保你输入的gene是ENTREZID，并且使用最新版本的clusterProfiler

enricher报错在进行非模式生物的KEGG富集分析

从报错信息来看就是你输入的基因与TERM2GENE的基因id不同，请仔细检查一下。

Does enrichGO support “ENSEMBL” format?

Please use the latest version of clusterProfiler and get the document by `?enrichGO`.

could not find function "gseGO"

@nitinmahajan20 You should library(clusterProfiler) first.

could not find function "fgseaMultilevelCpp"

Please update your related packages(DOSE, fgsea, and so on) and try again.

怎样使用自己构建的go和kegg的背景数据集分析

geneList 参数应当是一个数值型向量（如logFC值），其names是基因id。并不是一个data.frame。

can't find HPO.db, then install HPO.db error

Please use the devel version of Bioconductor to install HPO.db. ```r if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("HPO.db") ``` Or install...

can't find HPO.db, then install HPO.db error

Please make sure you are using the devel version of Bioconductor: ```r BiocManager::install(version='devel') ```

EnrichKegg still shows all pvalues even after specifying a specific pvalue cutoff

Please provide the kk2 object, and see the result of as.data.frame(kk2).