Hervé Pagès

How about using `suppressMessages(h5read(...))` or `suppressMessages(H5Dread(...))` in **alabaster.base** then? Since ArtifactDB datasets follow a strict policy, the risk of hiding other critical messages from the end user seems very very...

Agreed. Symmetry is important.

Thanks @grimbough Also no more messages when doing `PaulHSCData(legacy=FALSE)` with **scRNAseq** 2.17.5. Thanks @LTLA! @vjcitn This can be closed.

Seems to be related to lack of AEC library on your container @nlubock. Note that you should be able to fix that with `sudo apt install libaec-dev`. Even better: I...

Can you please provide your `sessionInfo()`? Thanks.

Thanks but in your original post you said you were using Rsamtools 2.0.2 but now your `sessionInfo()` reports that you were using Rsamtools 1.34.0. We need to see the full...

@vjcitn @bschilder Are guys planning to follow up on this?

FWIW some work was done by @mtmorgan last year to support CRAM, see the [`cram` branch](https://github.com/Bioconductor/Rsamtools/tree/cram), but I don't know how far Martin went or how much work would still...

UPDATE: The latest **Rhtslib** (2.99.2) now includes htslib 1.18 (was 1.15). See https://github.com/Bioconductor/Rhtslib/blob/devel/DESCRIPTION. I don't know how this update will impact CRAM support in **Rsamtools** though.

Hi Mike @grimbough , FWIW this also affected Bioconductor packages **customProDB**, **DominoEffect**, **metaseqR2**, **recoup**, **Sushi**, and **wiggleplotr** on today's build report (Oct 18, 2021) e.g. https://bioconductor.org/checkResults/3.14/bioc-LATEST/Sushi/nebbiolo2-buildsrc.html H.