Hervé Pagès

**pwalign** contains the `pairwiseAlignment`-related stuff taken from **Biostrings**. The plan is to deprecate this stuff in **Biostrings** (in BioC 3.19), and to redirect the user to the stuff that is...

**Biostrings** 2.71.5 (latest version) is already on nebbiolo1 so we should be good to go.

It doesn't need to. It's on the machine.

The 2 WARNINGs were expected. One is about using RMarkdown instead of Sweave for the vignette. Note that the vignette was just taken from **Biostrings** and put in **pwalign**. You...

Thanks Marcel for the feedback. > Note that `LazyLoad` field is now ignored. Removed. > Consider converting the `Rnw` file to `Rmd`. See my previous comment from 2 weeks ago...

What happened to the vignette? It's empty!

Thanks @ManonMartin for submitting **limpca** to Bioconductor. A quick note before I take a closer look at the package: Bioconductor packages should always be installed with `BiocManager::install()` (see for example...

Yes please. We expect that issues reported during the review process get addressed before the package can be accepted. Thanks for your understanding.

I think that the message can be silenced by setting the `rhdf5-NA.OK` on the dataset. This is something that high-level function `rhdf5::h5write()` does automatically for you: ``` library(rhdf5) m

Using -2^31 to represent a missing value must be conveyed one way or another, and that "special meaning" should be part of the data itself. Otherwise how are your Python...