Hervé Pagès

Good to know about **PSMatch**. I'd rather have some good use case before adding something like this to **Biostrings**, or at least have some user requests it. I agree that...

> Can we use .pngs for the figures rather than .pdfs since they don't format well? of course, thanks

@BerylKanali @jwokaty Where are we standing with this PR?

Just replaced `Biostrings2classes.Rnw` with Beryl's `Biostrings2classes.Rmd` (see commit a1fae35686d2fea09e896bd06a902c8ad1d5bbdf). Thanks for the reminder.

Hi @gevro , > The error occurs only when the code is run as an R script (e.g.. script.R file with heading #!/usr/bin/env Rscript). Maybe this is not using the...

You're using **Biostrings** 2.68.1 which belongs to Bioconductor 3.17. Please update your installation to the latest version of Bioconductor (~3.20~ 3.19, needs R 4.4) and reinstall **Biostrings**. This will get...

@gevro Thanks for your hard work tracking and narrowing down this nasty bug. Much appreciated. Can you please attach the file containing the code to your next comment? For the...

Unfortunately if the data is 845Mb, email is not going to work (generally speaking email attachments cannot/should not exceed 10Mb or 20Mb).

Ah, of course, that makes sense. Please send at `hpages` _dot_ `on` _dot_ `github` _at_ `gmail.com` (same address as in **Biostrings**'s `DESCRIPTION` file). Thanks!

Hi, `rawToChar(as.raw(0))` is an empty string so no surprise that `BStringSet(rawToChar(as.raw(0)))` returns what it does. The '?' you see when displaying `BStringSet(rawToChar(as.raw(135)))` is only a _displaying_ issue (more precisely it's...