Hervé Pagès
Hervé Pagès
> i'm wondering if there's a way to have rtracklayer::import simply throw a warning instead of an error? That doesn't solve the real problem which is that the remote file...
@lawremi Version needs a bump. People with the latest R-devel can't install the source tarball that we currently distribute (**rtracklayer** 1.55.3). Thx
I took a look at Dockerfile, went thru the list of deb packages that are explicitly listed in the file, and annotated them. This should help us decide what to...
Can we please be less eager to close this? > In the last release we have added support for sparse matrices, so that that is the current expected behaviour. There's...
@s-aibar Just a reminder that this issue is still pending and has been breaking the OSCA book for several months: https://bioconductor.org/checkResults/3.15/books-LATEST/OSCA.basic/nebbiolo1-buildsrc.html Thanks! @Alanocallaghan Note that `is()` is preferred over `inherits()`...
> 3. Don't use conda at all. This would require the user to have an appropriate version of Python already installed. Not good. Why? Python 3 is on almost every...
Interestingly we see this problem on nebbiolo1 (BioC 3.15) but not on nebbiolo2 (BioC 3.16) where `/usr/lib/x86_64-linux-gnu/libstdc++.so.6` is exactly the same (both machines have Ubuntu 20.04): - https://bioconductor.org/checkResults/3.15/bioc-LATEST/spatialDE/nebbiolo1-buildsrc.html - https://bioconductor.org/checkResults/3.16/bioc-LATEST/spatialDE/nebbiolo2-buildsrc.html...
And FWIW I don't get this on my laptop using BioC release (like nebbiolo1): ``` library(spatialDE) spe
Sorry for the delay. > Is there a reason for this wildcard search not being allowed on amino acid level? No particular reason. It's just that it's not implemented at...
Hmm.. interesting! I've never seen amino acid sequences in that format. Out of curiosity, may I ask how/where people retrieve amino acid sequences that are in the "MetThrGly" format?