heziqing

Hi everyone, I used the plot_genes_branched_pseudotime function to plot some genes, the function default stretches each branch into maturation level 0-100. But it stretched the pseudotime from -6000 to 0...

Microenvironment modeling analysis (patsy.PatsyError: categorical data cannot be >1-dimensional)

2

Hello everyone, I re-run the analysis https://spateo-release.readthedocs.io/en/latest/tutorials/notebooks/3_cci/2_microenvironment_modeling_analysis.html#, but I got an error when running the following code ``` niche_interp = st.tl.Niche_Model( adata, group_key='Annotation', genes=targets, smooth=False, normalize=False, log_transform=False, weights_mode="knn", distr="poisson", data_id="axolotl",...