scRNA.seq.course
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hemberg-lab
Analysis of single cell RNA-seq data course
I downloaded the docker container using `docker run -p 8888:8888 -e PASSWORD="jupyter" quay.io/cellgeni/scrna-seq-course:v5.14 ` Then I load the image using the following code `$ docker run --user root -e GRANT_SUDO=yes...
When running the single cell RNA seq course last week. We found that the command: `srat
Typo corrections: "Carrying several downstream analysis" -> "Carrying out several downstream analysis" "allows to explore" -> "allows exploring" Improved parallelism: "issues such as sensitivity ..., their accuracy ... and in...
For this question - "Create a new assay called “cpm” (Counts-Per-Million), which contains the result of dividing the counts matrix by the total counts in millions." The course's answer is...
Could you please provide some intermediate files so people like me can go through the whole classes?
I was wondering whether you could provide the intermediate files used as examples in this amazing tutorial. I downloaded some files, such as "ERR522959_2.fastq", "ERR522959_1.fastq", to follow along the class,...
The included figure should be helpful to get a sense on what to expect from the index/barcode read. Also thought to also include a local company and the software I...
fixed typos and replied to comment on accessing variable features for dimension reduction.
