Kun Sun

icon company Shenzhen Bay Laboratory icon location Shenzhen, China icon location Assistant Professor at Shenzhen Bay Laboratory

Results 4 comments of Kun Sun

Would it be possible to support `-k Auto`?

Dear Luis, Thanks for your interest in my work. I understand that it would be very nice that Ktrim could detect the adapters automatically, and I will try to add...

Ktrim doesn't work for Ribo-seq fastq files

Hi Ci, Thanks for your interest in my work. I believe that the issue is the adapter sequence used. By default, Ktrim uses the illumina TruSeq Kit adapter AGATCGGAAGAGC, while...

Can ktrim handle gzipped files?

Currently no. Maybe it could handle compressed files in the feature versions. However, I think that working on compressed files will signficantly slow down the analysis.

Can ktrim handle gzipped files?

Hi shengwang and flystar, I have released version 1.2.0 of Ktrim, which contains various improvements including support for Gzip-compressed files. Please have a try :).